Officials warn that if they're forced to retain the USS John F. Kennedy , they will have to take money from more important programs.
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The projected growth is based on increased priorities for protecting IT systems.
Lawmakers are trying to complete the first reauthorization of the agency since 1993.
Agency says requirement that companies not get an advantage from offering lesser health benefits than the Pentagon provides makes it hard for small businesses to win job competitions.
Revelations could be setback for plans to create nuclear waste storage site at Nevada location.
Pentagon officials said difficulties are being addressed, and will be ultimately solved by the Defense Travel System.
Six firms protested the December award of the Treasury Communications Enterprise contract to AT&T Corp.